AFRYCA/plugins/afryca.rcp/preloaded/repository/Library/snippet/pca.script

<snippet>
	<subclass>afryca.ase.Snippet</subclass>
	<file></file>
	<category>Library</category>
	<name>pca</name>
	<description></description>
	<code>
var pca = (typeof exports === "undefined")?(function pca() {}):(exports);
if(typeof global !== "undefined") { global.pca = pca; }

pca.PCA = function(preferences, isDecisionMatrix) {
	//Initialize DM matrix
	var dm = pca.createConsensusMatrix(preferences.length, preferences[0][0].length);
	var alternativesPreferencesExperts = [];
	
	var preference;
	var alternativesPreferences;
	for(var ex = 0; ex < preferences.length; ex++){
		preference = preferences[ex];
		
		alternativesPreferences = pca.computeAlternativesDominance(preference, isDecisionMatrix);
		alternativesPreferencesExperts[ex] = pca.substractMeanAlternativesDominance(alternativesPreferences);
		
		pca.addRowToDecisionMatrix(dm, alternativesPreferencesExperts[ex], ex);
	}
	
	//Compute covariance-variance matrix
	var mcov = pca.computeCovarianceMatrix(dm);

	//Descomposition
	var descomposition = pca.generateDescomposition(mcov);

	//Eigen values
	var eigenValues = pca.generateEigenValues(descomposition);
	var maxIndexes = pca.getMaxEigenValue(eigenValues);
	var max1 = maxIndexes[0];
	var max2 = maxIndexes[1];

	var eigenValue1 = eigenValues[max1];
	var eigenValue2 = eigenValues[max2];
		
	//EigenVectors
	var eigenVector1 = pca.generateEigenVector(descomposition, max1);
	var eigenVector2 = pca.generateEigenVector(descomposition, max2);
		
	//Coordinates
	var result = new Array(2);
	result[0] = new Array(preferences.length);
	result[1] = new Array(preferences.length);
	
	for(var expert = 0; expert < preferences.length; expert++) {
		result[0][expert] = pca.computeCoordinate(alternativesPreferencesExperts[expert], eigenVector1);
		result[1][expert] = pca.computeCoordinate(alternativesPreferencesExperts[expert], eigenVector2);
	}
	
	return result;

}

pca.createConsensusMatrix = function(rows, cols) {
	var matrix = [];
	for(var i = 0; i < rows; i++) {
		matrix[i] = [];
		for(var j = 0; j < cols; j++) {
			matrix[i][j] = 0;
		}
	}
	return matrix;
}

pca.computeAlternativesDominance = function(preference, isDecisionMatrix) {
	var numberOfAlternatives = preference[0].length;
	if(isDecisionMatrix) {
		var numberOfCriteria = preference.length;
		var values = []
		var acum;
		for (var i = 0; i < numberOfAlternatives; i++) {
			acum = 0;
			for (var j = 0; j < numberOfCriteria; j++) {
				acum += preference[j][i];
			}
			acum /= numberOfCriteria;
			values[i] = acum;
		}
		return values;
	} else {	
		var cm = pca.createConsensusMatrix(numberOfAlternatives, numberOfAlternatives);
		var value, value1, value2;
		for (var i = 0; i < (numberOfAlternatives - 1); i++) {
			for (var j = (i + 1); j < numberOfAlternatives; j++) {
				value1 = preference[i][j];
				value2 = preference[j][i];
				value = value1 - value2;

				if (value > 0) {
					cm[i][j] = value;
					cm[j][i] = 0;
				} else {
					cm[j][i] = -value;
					cm[i][j] = 0;
				}
			}
		}
		return pca.computeDominanceValues(cm);
	}
}

pca.computeDominanceValues = function(cm) {
	var values = [];
	var value;
	var max;
	
	for (var i = 0; i < cm.length; i++) {
		max = 0;
		for (var j = 0; j < cm.length; j++) {
			if (i != j) {
				value = cm[j][i];
				if (value > max) {
					max = value;
				}
			}
		}
		values[i] = Math.round(max * 100.0) / 100.0;
	}
	
	return values;
}

pca.substractMeanAlternativesDominance = function(alternativesPreferences) {
	var mean = 0;
	for(var i = 0; i < alternativesPreferences.length; ++i) {
		mean += alternativesPreferences[i];
	}
	
	mean /= alternativesPreferences.length;
	
	for(var i = 0; i < alternativesPreferences.length; ++i) {
		alternativesPreferences[i] -= mean;
	}

	return alternativesPreferences;
}


pca.addRowToDecisionMatrix = function(dm, alternativesPreferences, expert) {
	for(var i = 0; i < dm[0].length; ++i) {
		dm[expert][i] = alternativesPreferences[i];
	}
}

pca.computeCovarianceMatrix = function(dm) {
	var mx = MatrixUtils.createRealMatrix(dm);
	var cov = new Covariance(mx).getCovarianceMatrix();
	return cov.getData();
}

pca.generateDescomposition = function(preferencesAux) {
	var matrix = MatrixUtils.createRealMatrix(preferencesAux);
	var descomposition = new EigenDecomposition(matrix);
	return descomposition;
}

pca.generateEigenValues = function(descomposition) {
	var eigenValues = descomposition.getRealEigenvalues();
	var eigenValuesAux = new Array(eigenValues.length);
	for(var h = 0;h < eigenValues.length; h++) {
		eigenValuesAux[h] = Math.round(eigenValues[h] * 1000) / 1000;
	}
	
	return eigenValuesAux;
}

pca.generateEigenVector = function(descomposition, max) {
	var eigenVector = descomposition.getEigenvector(max);
	var eigenVectorAux = [];
	for(var h = 0;h < eigenVector.getDimension(); h++){
		eigenVectorAux[h] = eigenVector.getEntry(h);
	}
	return eigenVectorAux;
}

pca.getMaxEigenValue = function(eigenValues) {
	var max1 = -1;
	var indexMax1;
	for(var i = 0; i < eigenValues.length; ++i) {
		if(max1 < eigenValues[i]) {
			max1 = eigenValues[i];
			indexMax1 = i;
		}
	}
	
	var indexMax2;
	var max2 = -1;
	for(var i = 0; i < eigenValues.length; ++i) {
		if(i != indexMax1) {
			if(max2 < eigenValues[i]) {
				max2 = eigenValues[i];
				indexMax2 = i;
			}
		}
	}

	var indexes = [];
	indexes[0] = indexMax1;
	indexes[1] = indexMax2;
	return indexes;
}

pca.computeCoordinate = function(v1, v2) {
	var acum = 0;
	for(var i = 0; i < v1.length; ++i) {
		acum += v1[i] * v2[i];
	}
	return acum;
}

pca.PCA3D = function(preferences, isDecisionMatrix) {
	//Initialize DM matrix
	var dm = pca.createConsensusMatrix(preferences.length, preferences[0][0].length);
	var alternativesPreferencesExperts = [];
	
	var preference;
	var alternativesPreferences;
	for(var ex = 0; ex < preferences.length; ex++){
		preference = preferences[ex];
		
		alternativesPreferences = pca.computeAlternativesDominance(preference, isDecisionMatrix);
		alternativesPreferencesExperts[ex] = pca.substractMeanAlternativesDominance(alternativesPreferences);
		
		pca.addRowToDecisionMatrix(dm, alternativesPreferencesExperts[ex], ex);
	}
	
	//Compute covariance-variance matrix
	var mcov = pca.computeCovarianceMatrix(dm);

	//Descomposition
	var descomposition = pca.generateDescomposition(mcov);

	//Eigen values
	var eigenValues = pca.generateEigenValues(descomposition);
	var maxIndexes = pca.getMaxEigenValue3D(eigenValues);
	
	//Indexes of maximal eigen values
	var max1 = maxIndexes[0];
	var max2 = maxIndexes[1];
	var max3 = maxIndexes[2];

	var eigenValue1 = eigenValues[max1];
	var eigenValue2 = eigenValues[max2];
	var eigenValue3 = eigenValues[max3];
		
	//EigenVectors
	var eigenVector1 = pca.generateEigenVector(descomposition, max1);
	var eigenVector2 = pca.generateEigenVector(descomposition, max2);
	var eigenVector3 = pca.generateEigenVector(descomposition, max3);
		
	//Coordinates
	var result = new Array(2);
	result[0] = new Array(preferences.length);
	result[1] = new Array(preferences.length);
	result[2] = new Array(preferences.length);
	
	for(var expert = 0; expert < preferences.length; expert++) {
		result[0][expert] = pca.computeCoordinate(alternativesPreferencesExperts[expert], eigenVector1);
		result[1][expert] = pca.computeCoordinate(alternativesPreferencesExperts[expert], eigenVector2);
		result[2][expert] = pca.computeCoordinate(alternativesPreferencesExperts[expert], eigenVector3);
	}
	
	return result;

}

pca.getMaxEigenValue3D = function(eigenValues) {
	var max1 = -1;
	var indexMax1;
	for(var i = 0; i < eigenValues.length; ++i) {
		if(max1 < eigenValues[i]) {
			max1 = eigenValues[i];
			indexMax1 = i;
		}
	}
	
	var indexMax2;
	var max2 = -1;
	for(var i = 0; i < eigenValues.length; ++i) {
		if(i != indexMax1) {
			if(max2 < eigenValues[i]) {
				max2 = eigenValues[i];
				indexMax2 = i;
			}
		}
	}
	
	var indexMax3;
	var max3 = -1;
	for(var i = 0; i < eigenValues.length; ++i) {
		if(i != indexMax1 && i != indexMax2) {
			if(max3 < eigenValues[i]) {
				max3 = eigenValues[i];
				indexMax3 = i;
			}
		}
	}

	var indexes = [];
	indexes[0] = indexMax1;
	indexes[1] = indexMax2;
	indexes[2] = indexMax3;
	return indexes;
}


pca
	</code>
</snippet>